BDX Research & Consulting LLC

Next-generation sequencing data analysis solutions We provide all stages of next-generation sequencing data analysis, as well as interpretation of NGS data and document (manuscript, proposal or product description) preparation.

Examples of NGS data analysis modules:

Whole-genome sequencing: QC of FASTQ & BAM/SAM, Genotype calling, QC of variants (whole-sample & invididual), VCF file merging, allele-frequency computing, functional annotation, population stratification.
RNA-seq: QC of FASTQ & BAM/SAM, FPKM generation, differential expression analysis, coexpression network analysis
ChIP-seq: QC of FASTQ & BAM/SAM, peak calling.
GWAS: Population stratification, genomic control, association test, functional annotation, gene analysis, pathway analysis, epistatic interactions.
Rare variant analysis: Allele frequency computing, rare variant collapsing, burden test, functional annotation, gene analysis, pathway analysis, epistatic interactions, pretective variant discovery.
Network analyses: Weighted gene coexpression network analysis, consensus network analysis, differential gene network analysis, association between variants and gene networks, functional module detection, disease module detection.